rs27497023 SNP Detail

Summary

• ID
  rs27497023
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114354433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTTGTCT CCCTCTCGAA
  GTCACCTTCA TCCCAGGCTT CAGAGGGCAG GCACGGGCGC TTTGATGCAG AGGCATCATG
  TCAGGGAAAT GGAAACATTT CACATTGTAA ATCCTCAGGT TGTCAGAGAA ACCCTAATGA
  GAAAGGAGAC TGGCAAGGAG CACCCAGGGC TGCTTGAGGA GGGGGTGCTC AAGACTCTGA
  S
  AGACAGAAAT ATAGCCTGTC ACTCTGTTAA CACGCTTTCT TCACTGTACC CATGGGAGGC
  AGGTCATTCT CCCAGGGTCC CACTGGGCTG GAAGCCATGG CATTTAGCAG TTGGTTCAAA
  TGCTTTAGTC AGTTGAAGCC ACCCAGGGCT GAAAGTATTT TGGAACGTCT GAAATTGGAG
  TCTGATTACC TCTCCAAACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37699750	NES09230606	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27497023					SNP	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37699750	NES09230606	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114354433 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597585	regulatory region 597585			870 bp distal
Rr597586	regulatory region 597586			610 bp proximal
Trabd2b	TraB domain containing 2B			Intron
				Noncoding-Transcript-Variant