rs27497020 SNP Detail

Summary

• ID
  rs27497020
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114354561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCCTAAT GAGAAAGGAG
  ACTGGCAAGG AGCACCCAGG GCTGCTTGAG GAGGGGGTGC TCAAGACTCT GAGAGACAGA
  AATATAGCCT GTCACTCTGT TAACACGCTT TCTTCACTGT ACCCATGGGA GGCAGGTCAT
  TCTCCCAGGG TCCCACTGGG CTGGAAGCCA TGGCATTTAG CAGTTGGTTC AAATGCTTTA
  R
  TCAGTTGAAG CCACCCAGGG CTGAAAGTAT TTTGGAACGT CTGAAATTGG AGTCTGATTA
  CCTCTCCAAA CAAGAAAGCT CTTGGGCCTA ATTTAGGAGA AACTGAGTCA CAGCTCCCAA
  GTTCTATTCA GTTCAAAGCC ACAGATAAAA TTATTAGTCA TAAAGAGTAC ACCTCACCAC
  TATCAGAAAG AGATAGTAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37699747	NES09230609	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A		G	G	A	G
ss147269868	ENSMUSSNP4150197	ENSEMBL	ENSEMBL_Sanger	f	SNP		G									A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27497020					SNP	G	G	G	G	G	A	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37699747	NES09230609	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114354561 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597585	regulatory region 597585			998 bp distal
Rr597586	regulatory region 597586			482 bp proximal
Trabd2b	TraB domain containing 2B			Intron
				Noncoding-Transcript-Variant