rs27497018 SNP Detail

Summary

• ID
  rs27497018
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114354729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAACAAGAAA GCTCTTGGGC CTAATTTAGG AGAAACTGAG
  TCACAGCTCC CAAGTTCTAT TCAGTTCAAA GCCACAGATA AAATTATTAG TCATAAAGAG
  Y
  ACACCTCACC ACTATCAGAA AGAGATAGTA GAATGCCAAG GTTAAGATGG GGGCAGGGTG
  CTCCAGGTTC AGTCTTACCT ATAGAATTCC ATTTCTACAC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37699745	NES09230611	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27497018					SNP	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37699745	NES09230611	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114354729 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597585	regulatory region 597585			1166 bp distal
Rr597586	regulatory region 597586			314 bp proximal
Trabd2b	TraB domain containing 2B			Intron
				Noncoding-Transcript-Variant