rs27497014 SNP Detail

Summary

• ID
  rs27497014
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114356463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCCACTT CAGGCAAGGC
  TCTTACTGAA CTTGGGACTC ATTAGTTCAT CTAGTCCAGC TAGCCATGAA TTCTTTGTCT
  CCTCTTGCTG CTTCCTGGAA CTACAGGTGG GCCTCCATGC CTATTCAGCT TTTATGTAGG
  TTCTGGGGAT CTGACCTGTG GTCCTCACTT CATCCACTGA TTCATCCTTC CAGAGTGGGG
  Y
  ACAGACTTTA GCCCATTTTA CCTTAGAAAA CACTGGGAAA GGCTAGCCCA GCTCTCATGG
  GGGCACTGTA ACACAGCCCC TCTAATTTGT CACCCAGAGC TCTCTCTGCT CTTCCCCATA
  CCATCCACTC AACATCATGC AGCATCTATG AGATGGTAGG CAGAGGACCA GGTAGGAGTC
  TATAGAGATG AAAAGGCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37699741	NES09230582	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	C	T	T	T	T		T	C	T	T		T
ss321274315	CHEV_4_114171871	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27497014					SNP	T	T	T	C	T	C	T	T	T	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37699741	NES09230582	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114356463 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597586	regulatory region 597586			1399 bp distal
Rr597587	regulatory region 597587			1632 bp proximal
Trabd2b	TraB domain containing 2B			Intron
				Noncoding-Transcript-Variant