rs27497012 SNP Detail

Summary

• ID
  rs27497012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114356620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGGGGCAC TGTAACACAG CCCCTCTAAT TTGTCACCCA
  GAGCTCTCTC TGCTCTTCCC CATACCATCC ACTCAACATC ATGCAGCATC TATGAGATGG
  Y
  AGGCAGAGGA CCAGGTAGGA GTCTATAGAG ATGAAAAGGC TCTAAATCAA GAATATAACA
  TTCTTTGTGA GCAGACAGGA GAAATAATTT GAACAACTTT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37699739	NES09230584	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27497012					SNP	C	T	C	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37699739	NES09230584	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114356620 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597586	regulatory region 597586			1556 bp distal
Rr597587	regulatory region 597587			1475 bp proximal
Trabd2b	TraB domain containing 2B			Intron
				Noncoding-Transcript-Variant