rs27496829 SNP Detail

Summary

• ID
  rs27496829
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:115307802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTGTTTA GTTTCTGTTT
  TAAGGAGGCA GAGGTTGGAA ATAAAGATCT GGGATTCATA GAACTTACGT AAATTTTAAA
  ATATCTAAGA ATATTATCAA TAATGAGTAA AGCCCTGATG ATGTGCCTTT AGAAAATGAA
  AAGACTGAAT TGAGGCTCTC TGGTTGGGAG AAGGCTAAAG CATGAAAGGG GAGAAGGAAA
  M
  AGAATGATGA GAGAGGGGAA GGCAAACGAA TGACAAGGAA GAAGGAAGGA AGGAGAATAA
  GGAAGAATGA TGAGAATCTC TAGGGAACAG AAAAAGTACC TGAACCGACA GCTTACATCT
  ACTACTAACT CTGAGTTATT ATTTAATCAG TTCCCATTCC TGCCTTTCTC AGGACCCTCC
  TCAACTGTGA GCTCAAGAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37696868	NES09223082	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27496829					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37696868	NES09223082	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:115307802 () rs orientation: forward

Symbol	Name	Function Class
Cyp4a30b	cytochrome P450, family 4, subfamily a, polypeptide 30b	1999 bp upstream
Rr597735	regulatory region 597735	77 bp proximal
Tssr38460	transcription start site region 38460	1966 bp upstream