rs27496826 SNP Detail

Summary

• ID
  rs27496826
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:115308596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAAGTTA GGAATATCAG
  AGAGCTTTGG CTCTTTTTCC ATTATTATCT CCTTTTATTA TCTGCCTGAG GCTGATTATG
  CAACAGGAAC TGAGACACAT GGTTGGCCTC AGCCTCCTCT CCACACCTCA CTGTTTTTTT
  TTTTTTTCCA TAAATTCTTT TTTTAAAAAA AACTCCCTGG GAATACAACT TGATGGTAAC
  Y
  CTCCTGCTAT TTGGAAGCTA CCATTTCTCT CTTTGTCTCT CTGTCTGTCT ATCCTCTATC
  TCTGTCTCTC TCTGTCTCTC TGTCTCTCTC TCCCTTCTTC TCCTTTACAC TCATTACAAA
  AATGAAAAAA AATATATACA AATATTTTAC AAAAGCTCTA AAGCTCATCC TCTATGGCCT
  ATACATTTTA TTCCTCAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37696865	NES09223049	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27496826					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37696865	NES09223049	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:115308596 () rs orientation: forward

Symbol	Name	Function Class
Cyp4a30b	cytochrome P450, family 4, subfamily a, polypeptide 30b	1205 bp upstream
Rr597735	regulatory region 597735	284 bp distal
Tssr38460	transcription start site region 38460	1172 bp upstream