rs27496825 SNP Detail

Summary

• ID
  rs27496825
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:115309198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTTTTTT TCACACAGAG
  AGTTGTGGTG AGTCCAAAAA GAATGAGAGG ATTTTGAAAA CACCCAGAAA AGTAAAAAAT
  AAAATAATGT CCATCTGGGG AGATGGTAAG ATGGCTTTGT AGTTAAGAGT CTTACTGCTC
  TTAAAGAGGA CCCATAACGC TAGCTCCAGA GCTAGCTCAG CAATATTGTT GACCTCCCTG
  R
  GTACCAACAC TCACATGAGC ATGCCTATCC ATACACACAC CCATGGTTAT ACATATAACC
  AATAAATAAA TAAGTAAATA ATAAAAGCTG TTGAGAGGAA GAAGAAAAGC AAATATTGAA
  CTATGGGGTG GTAAGGAATG AACCTGGTTA CTGTGCAACT TAGAAGATAC AGGGAGATAT
  GGACACAGAC ACTTTAAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37696864	NES09223019	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27496825					SNP	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37696864	NES09223019	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:115309198 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14609	CpG island 14609	1760 bp proximal
Cyp4a30b	cytochrome P450, family 4, subfamily a, polypeptide 30b	603 bp upstream
Gm12838	predicted gene 12838	1791 bp downstream
Rr597735	regulatory region 597735	886 bp distal
Tssr38460	transcription start site region 38460	570 bp upstream