rs27496819 SNP Detail

Summary

• ID
  rs27496819
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:115309932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTATGCCA TACTTAAATG
  TGGGTACTGA AGCAACAGCA ACAGTCGGTG ATCTGCAGGA CATTTTATTA TGAGTATCTT
  TGAGCTCAGC CATATCACAA ATGTGTTTGG TATCTTTGGA CTCCTCCAAG TGGTCTCTTT
  GCTTGGCCTA CTGCTGCTGC TGTTAAAATC AGCCCAATAC TACCTGCACA GGCAATGGCT
  Y
  ATCAAGTCCC TCCAGCAGTT CCCACCCGCA CCCCCCCCCC AATGGCTTTT TGGGAACACC
  CTAAAGGTAA GAAGACACAA CCTGTTATAT GATGACCATG TGATCTCTGA GGACTACTCA
  GTTTAACCGC TCAGGGATAA GTGTACAATT TCTTGCTGGG GGCTTATCTC TTGTCAATAC
  ACATATCTCA AATATGCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37696858	NES09223025	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27496819					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37696858	NES09223025	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:115309932 () rs orientation: forward

Symbol	Name	Function Class
Cyp4a30b	cytochrome P450, family 4, subfamily a, polypeptide 30b	Coding-Synonymous
Gm12838	predicted gene 12838	1057 bp downstream
Rr597735	regulatory region 597735	1620 bp distal
Tssr38460	transcription start site region 38460	157 bp downstream