rs27496413 SNP Detail

Summary

• ID
  rs27496413
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:116200259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATACATA ATGAAGACAT
  GCATTTTTAT TTTCTAACTA TAACAGGTTC TTTTGTACTT ACAGATATGT TGCCTTGGCT
  TGAACTTTGC TTACTATACA ACTATCTTAG AAGGTACCAC TTTGCTTTAT GATAGCTTAT
  TAAATGAGCA TGGGCTTAAT ACAGTCCTTA TGTTTCAAGT TGGCTGTTAC TTGTGGCAGC
  W
  TCCTCTGCAG TTCTCCTTTC ATATACTGCT TCTGACAAGG GACCTGCATA CCTTGTTAGC
  TTTCCATCTT CTCTTTTAGG CATTCTCTCT CCTTTGACAT AAAACTACCC AGGTCTGAAA
  TCACATCATC AAAAACGACT GCTTTCTGAA GTCATCAGAA CATACTACAC TCTACCTTCA
  CTATAAAAAG TGTTATTCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37694737	NES09228492	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27496413					SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694737	NES09228492	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116200259 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mast2	microtubule associated serine/threonine kinase 2			Intron
				Noncoding-Transcript-Variant
Rr597900	regulatory region 597900			627 bp distal
Rr597901	regulatory region 597901			740 bp distal