rs27496412 SNP Detail

Summary

• ID
  rs27496412
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:116200344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCTTACT ATACAACTAT
  CTTAGAAGGT ACCACTTTGC TTTATGATAG CTTATTAAAT GAGCATGGGC TTAATACAGT
  CCTTATGTTT CAAGTTGGCT GTTACTTGTG GCAGCTTCCT CTGCAGTTCT CCTTTCATAT
  ACTGCTTCTG ACAAGGGACC TGCATACCTT GTTAGCTTTC CATCTTCTCT TTTAGGCATT
  S
  TCTCTCCTTT GACATAAAAC TACCCAGGTC TGAAATCACA TCATCAAAAA CGACTGCTTT
  CTGAAGTCAT CAGAACATAC TACACTCTAC CTTCACTATA AAAAGTGTTA TTCCTGAATT
  CATGGCATTC TCTTTATCAT GACTTTTGAC AAGAGTGACC TCACTGTCCT CATAATCTTT
  CAACATCCCA GCCTTGAGAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37694736	NES09228493	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27496412					SNP	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694736	NES09228493	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116200344 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mast2	microtubule associated serine/threonine kinase 2			Intron
				Noncoding-Transcript-Variant
Rr597900	regulatory region 597900			712 bp distal
Rr597901	regulatory region 597901			825 bp distal