rs27494199 SNP Detail

Summary

• ID
  rs27494199
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117939510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTCATCA GCTGCTATGA
  TCCCCCAGCT GTCAGCACTC TGGACTGACG GGCACTGTCA GCTCTGAGGT CTCGTACCCT
  CTCTGGGGCA GCCCTGGACC AACGGATAGT GGTGACCAAG GAACTACAAA AGCAGACTCC
  CCTCCCTCCA TTTAAAAGGA CCGGCTCAAC CCCCATCTCC ACGGGCACAG TGAGGTCGTT
  M
  CTGAGAGCGA ACCATACGTG ACTTCTTACG TGAGTGTCCC TTGCATTTCT CTGCCTCCCT
  TCCTGTCCTT CCGGGGGCTG CTCCCACAGC CGCGCCCTGG TGAGCTTACC CCACCTGAAA
  TTTATCTCAG AGTGTGCCTC TCTCAACAAT ACCACCTTGC CCACCTGCCT CACCTGAGCA
  CTGACACCAC ACCTTCCCGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37689932	NES09216910	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27494199					SNP	A	A	A	A	A	C	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37689932	NES09216910	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117939510 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr598304	regulatory region 598304			1467 bp distal
Rr598305	regulatory region 598305			442 bp distal
Rr598306	regulatory region 598306			969 bp proximal
Rr598307	regulatory region 598307			1478 bp proximal
St3gal3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant