rs27494196 SNP Detail

Summary

• ID
  rs27494196
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117939773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCCTTCC GGGGGCTGCT
  CCCACAGCCG CGCCCTGGTG AGCTTACCCC ACCTGAAATT TATCTCAGAG TGTGCCTCTC
  TCAACAATAC CACCTTGCCC ACCTGCCTCA CCTGAGCACT GACACCACAC CTTCCCGTCA
  AAAACACGCG GAGACACACT GGGATGAGAG CTTTAAACCC GAGACTGCAG AGATCTAGAA
  Y
  TCACACAGTA GATACATGCA CATGTACACA AACAATTAAA AAAAACTATT TTATAGAGGG
  TAAACAAGGC CATAAGTACT TTGTAAGCCC CTCTGAGAAA AAAAAACAGC TTTAAAATGG
  TTCTAAATAA ATATTTCTAC CTTGCTTGCG ACCAAACAAA AACAATTACT AAATACATAA
  GAAAGAGTCA CAAGTCAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37689929	NES09216913	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27494196					SNP	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37689929	NES09216913	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117939773 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr598304	regulatory region 598304			1730 bp distal
Rr598305	regulatory region 598305			705 bp distal
Rr598306	regulatory region 598306			706 bp proximal
Rr598307	regulatory region 598307			1215 bp proximal
St3gal3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant