rs27494192 SNP Detail

Summary

• ID
  rs27494192
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117941276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTAATCA GTAGGAGGTC
  ACTCTGATTG GCTCAAAGTG GAACAGATTT AATAACTCAA AAATGTGATT TTGTCACTCC
  TCTGTGCCAA ATACTGCTCA TAATAAGAAA GCTCATAATA ATGACACGTT AGAGCCCAGA
  GGAAAATGTT TCAAAACTAT TTTATAATAA AAGGAATGGA ATAACAAGTT GCACTGACTT
  Y
  GAATGATGAC AAACACTTTA GAGCATTGCC AGACCCATGC AAAACTCCTG ACACTTTTGT
  CTTGCATCTG AAGATACATT CTAGAAACCT TTTCCTACCA GTACATAGAG GCCCTCTAGC
  TCCAGCCTCA GACTCACTAA ATGGGAACCT AATTCATTAA TTTGTTCCCT GCTGATAAAC
  ACCTAAATAG CTGCCAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37689925	NES09216862	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27494192					SNP	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37689925	NES09216862	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117941276 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr598306	regulatory region 598306			28 bp distal
Rr598307	regulatory region 598307			267 bp distal
St3gal3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant