rs27494191 SNP Detail

Summary

• ID
  rs27494191
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117942213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCTGTC TCTCTTCCCA
  GCACTCTCTC TCACCTTCTC CAGTCTCACA GACACACATT CTCTCTCTCT CTCTCTCTCT
  CTCCCTCTCT CTCTAGCACT CTCTCTTACT TTATTCAGTC TCACATCTCC CAGCTTTCTT
  CCTGGAAGGC AACCAAAGTT ATTATTTCTA GATTTCGTGC TCACAGTTAT TTTATACACA
  Y
  GTATGCAAAT CTAGATGTGA TCTAGGCTTA TGTATAGATA AACATGAACA TATGTACAAT
  TTCCCACCCT CTTCTGAATA AATGAAGACA TTTATACCCA AAATAGAACA GTGTTAACGG
  GACTCTGTAG ACAGCTACCT TCAAGATCAT GCTGCGGCTT CAAACATTTT TCAACTTATA
  TTTGGGCCTT TTGCCAGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37689924	NES09216812	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C		C	C	C		C	T		C
ss45574786	mCV24293338	ABI	CRAMUS_MOUSE	f	SNP	T	T	C				C		C
ss147299731	ENSMUSSNP160445	ENSEMBL	ENSEMBL_Sanger	f	SNP			C						C
ss321281647	CHEV_4_117757621	CHEVERUD	SCREENING_POP	f	SNP											C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27494191					SNP	T	T	C	C	C	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37689924	NES09216812	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117942213 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr598306	regulatory region 598306			965 bp distal
Rr598307	regulatory region 598307			1204 bp distal
St3gal3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant