rs27494188 SNP Detail

Summary

• ID
  rs27494188
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117945563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTATTTT GAACAGGCAG
  ATGCAATCGA CCTCTTACAG AGTTCTACAA TTAACTTCTC CACAGGGCCA CGGATGGTCT
  TGGATGCTAA CCCAAACTAA AACTAAAATC TAATTTAACA ATGCAACTTT GGACCAGTAG
  GTATCAGAGC ACTCCCAGGA TCCATATAAT TAAAATCTAT GATGCTCGCT TAACTGCACG
  R
  GTCTGTAGAT TCCTAAAGGT GGAGGGTGGG CATCACTGCT CCTCCAGGTT ATGGCTGTCT
  TCCCAGGTCT CGCAGTGATC ACACCACACA GCCACACGTG TTAGTATCAC TACCCATCAT
  AACAGAAAGG GACTTAAACA ACGGAGCTTG TGGCAGCTGC TGTGATACAG TCATCCCCTC
  TGGGCATAAC ATGACAGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37689921	NES09216727	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27494188					SNP	G	G	A	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37689921	NES09216727	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117945563 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr598308	regulatory region 598308			1658 bp proximal
Rr598309	regulatory region 598309			1738 bp proximal
St3gal3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant