rs27494187 SNP Detail

Summary

• ID
  rs27494187
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117945707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGCACTC CCAGGATCCA
  TATAATTAAA ATCTATGATG CTCGCTTAAC TGCACGGGTC TGTAGATTCC TAAAGGTGGA
  GGGTGGGCAT CACTGCTCCT CCAGGTTATG GCTGTCTTCC CAGGTCTCGC AGTGATCACA
  CCACACAGCC ACACGTGTTA GTATCACTAC CCATCATAAC AGAAAGGGAC TTAAACAACG
  R
  AGCTTGTGGC AGCTGCTGTG ATACAGTCAT CCCCTCTGGG CATAACATGA CAGTCCATCA
  CAGAACAGAT GGCCTGACCT ATACAATACC TTGGCCCCAC AAAGGAGGGA ACAGAACAAG
  CAAAATTCAG TGGCAGCAAG GCCTATGGTA GTGTAACAAA GGGTCCCTAA ACTCTCTCCC
  TGGCATTCTG TTCACCATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37689920	NES09216729	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27494187					SNP	G	G	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37689920	NES09216729	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117945707 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr598308	regulatory region 598308			1514 bp proximal
Rr598309	regulatory region 598309			1594 bp proximal
St3gal3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant