rs27494186 SNP Detail

Summary

• ID
  rs27494186
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117945907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTTGTGG CAGCTGCTGT
  GATACAGTCA TCCCCTCTGG GCATAACATG ACAGTCCATC ACAGAACAGA TGGCCTGACC
  TATACAATAC CTTGGCCCCA CAAAGGAGGG AACAGAACAA GCAAAATTCA GTGGCAGCAA
  GGCCTATGGT AGTGTAACAA AGGGTCCCTA AACTCTCTCC CTGGCATTCT GTTCACCATC
  Y
  TCATCCTCCT TTCCCAGCTG CACGTGGTCC TGAGGGAGGG GTGGGATGCT AGATACAGAG
  GTGACCCATC TTGGGTAAAT TCATGTCTTC AGGTCTCCCT GGAAAAAGTC ACACAACAGC
  AGCATATACA AGTTCTCCAT GACTCTGATC ACTTGAAAGC TGAGGTTTGT CATTGCTACA
  CACAGTTGGT GGCTTCCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37689919	NES09216731	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27494186					SNP	T	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37689919	NES09216731	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117945907 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr598308	regulatory region 598308			1314 bp proximal
Rr598309	regulatory region 598309			1394 bp proximal
St3gal3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant