rs27494180 SNP Detail

Summary

• ID
  rs27494180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117947825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAATATAT AATATCATTG
  CTTGGGATGA TGCCAATGCT AATTGGACAA CACTGCCTTG TGGGTGGTAA ATTTAGTGCT
  TACCTAAATT TACACCATGG TGTTTGCCCT TTCCTCCCAT AATCCCTCCC TGGAGTTTAA
  ACTTCATCAG CCCTTTATTG GTGGTGAGTT TTCTTCAGCA TGTCTCTCAT TCCTAGAAGA
  Y
  GGGGTTCCCT GCCCACCCAG TGCGCATGCG CGGGCCACAC CCCCCGGGGG GGGCTCTCAC
  GGGCTGTCTT TAGAAGCCCA CTGTGTCCAA GCAGCATTCT TTCACGGGCA ATGTTTTTGA
  CTCTCTGGAT GTTCTTCAGA CAGTCCCACA CCAAATTACA TTTCACATAC AGTAAACGGC
  CCCTCTAGAA GGTGTACAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37689913	NES09216664	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27494180					SNP	C	C	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37689913	NES09216664	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117947825 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr598308	regulatory region 598308			366 bp distal
Rr598309	regulatory region 598309			503 bp distal
St3gal3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr43031	transcription start site region 43031			1122 bp downstream