rs27493951 SNP Detail

Summary

• ID
  rs27493951
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119116462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGGATCC CTTGAACTCG
  GTCTGGAGCT CCAAACACCT GGTCCTCAAC ATAGCCTCTG AGTCAAAGAG ACTCAGACAC
  TCAAAGAGAG ATCAGAGGCA AGACCCAGCC CACACGTGAC CCAGTAAGGA CCAGGCCTAT
  TCTGTCGACA CCAGAATGAG GACCAGGATT TATTCACTAG CTTAGCCACC AGCTCCTTCA
  K
  TTGCCAACGT ATTTGCTGAA GGACCCATCT GCCTGATACA GGCTGGGCCC TGAGGGCCTC
  CCAGCCACAG AAGGATCTCA GCGCACAGCA CTCGAGGCCA GACAGCCTTC CATATTCCCT
  CCAATTCTCA CAGCAAGCGC TTAGAAGAAG TACTCTGGGC TAAGGACTGT CTCCACATCA
  GACGTAAGGA CACTGACCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37684979	NES09212219	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27493951					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37684979	NES09212219	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119116462 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cldn19	claudin 19			Intron
				mRNA-UTR
Rr598549	regulatory region 598549			1737 bp distal
Rr598550	regulatory region 598550			138 bp proximal
Rr598551	regulatory region 598551			568 bp proximal
Rr598552	regulatory region 598552			792 bp proximal
Rr598553	regulatory region 598553			1864 bp proximal
Tssr38731	transcription start site region 38731			1837 bp downstream