rs27493946 SNP Detail

Summary

• ID
  rs27493946
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119117289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTGCATCT CTGCCTGCCC CCCCCCCCTT GGAGTCTGGT
  ACCAGAACTT CCATGAAGGA AGATCACAGC TACCCCTGGT GGCCACCTAA TGCCTGGTCT
  R
  GTAAGAGAGC AGGACCCCAG GGTGAGGAGC CCCTGGCCTG GAGACCATTC CATAGGTAAA
  ATGTTCTAAG CCCTCCCTGG GAGTCCTCCT GAGGGAAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37684974	NES09212224	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27493946					SNP	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37684974	NES09212224	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119117289 () rs orientation: forward

Symbol	Name	Function Class
Cldn19	claudin 19	mRNA-UTR
Rr598550	regulatory region 598550	447 bp distal
Rr598551	regulatory region 598551	8 bp distal
Rr598552	regulatory region 598552	14 bp distal
Rr598553	regulatory region 598553	1037 bp proximal