rs27493942 SNP Detail

Summary

• ID
  rs27493942
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119117967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCCTATC CCTGGACTCC
  AGGGCTGCCC CTCTCCTGGG ATGAGGTGTC CACCACTATC TTCTCTTGCT TCTCACATGC
  CTTCCTAGGT CAGTGACCTA GTGACCATTT TCACTTCTAG TCTCTAACCA TATCTCCCAC
  CAAATTACTG AATCTCCAGG AGCCAGCTCA GCTTCTTGCT TCTGTGCAGT CTTGAGGTTC
  R
  AAGACCAAAA CATCACAGAT GCCAGTTGGG GGTGGGGTTG GGGGTGGGGG AAGCTGGTGC
  CCGAGAGCTG CTATGCTCAG GAAATCACCT ATCTGCTGAA CTGCTGACCA ATTAATCTTC
  TGATTGATGG CAGCCGTCGG CCCCCATGGA TACCTCTGGT CCTAAACAAG TTCCCCAAGT
  GAGAACCACA GAAGAGCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37684970	NES09212228	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27493942					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37684970	NES09212228	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119117967 () rs orientation: forward

Symbol	Name	Function Class
Cldn19	claudin 19	mRNA-UTR
Rr598550	regulatory region 598550	1125 bp distal
Rr598551	regulatory region 598551	686 bp distal
Rr598552	regulatory region 598552	692 bp distal
Rr598553	regulatory region 598553	359 bp proximal
Tssr38732	transcription start site region 38732	1494 bp upstream