rs27493940 SNP Detail

Summary

• ID
  rs27493940
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119118658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGAGTCCTG GCCACTGGAG
  GAGACGCCTA TATCCTTCCC ATCAATGTCC CTTTGTGCTT AATGACTTTG AATCCTGTCA
  CCCGTAGCCT GATTAACCCA GAGTTTGAAA CCTGTGAACC AAATGTGACA CAGATAGCCT
  CTCCCCAGGT CTGTTCCTTA GCAGCCCTTG GTCTTTGGTT GTGAGGCTGG CTGGAAGCCT
  Y
  ATGATCCCTC TTCACAGTCT GAGGGCTGGG AAGCTCAAGA TTTGGTGGGG GGAGGGGGAT
  GCAGGCAGGC TGTGCTGGCT ACATCTTGTG GTTGTCAGGA GCAGGCGTGA AAGTTCAGAG
  CTCCTTGCAA GGAGAGGACC TGGCAGTGGG GTGGCATTGT CTGTTCCTCT ATGAAAGGAA
  GCTCATTCCA CTCTCACTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37684968	NES09212165	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27493940					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37684968	NES09212165	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119118658 () rs orientation: forward

Symbol	Name	Function Class
Cldn19	claudin 19	mRNA-UTR
Rr598550	regulatory region 598550	1816 bp distal
Rr598551	regulatory region 598551	1377 bp distal
Rr598552	regulatory region 598552	1383 bp distal
Rr598553	regulatory region 598553	within coordinates
Tssr38732	transcription start site region 38732	803 bp upstream