rs27493937 SNP Detail

Summary

• ID
  rs27493937
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119119588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTACTTTTG TGTTACTTCG
  TGTGATAACG ACGCTCAGTG TAGGCTTTTT TTTTTTTTTT TTTTTTTTTT TTTTGATCCT
  TATCTGGCAG AGGTACACAC CTAAAAGGAT GGCTGGATTT GCTTTAACCT CTTAGAACAG
  GTTCCGGGGC AAGGAGAGCT ATGATGTTGG GAAGACAACA GCTGACAGGG TCCACCCTAC
  Y
  CGTTTGTATG TTTGCTAATG AAAGAAAAGT AAGAAATAAA AAGTTTCAAA AGACCCCCCG
  GGGTTTGCTG GCTGTCTTTA CTCTGACCAA GGCATAAAGA CTTTCATGTC TCACAGCACC
  TCAGACTCCT TCATTGTGCC ACCTGGCCTG TTGGCCACTC ACCACTGTGA TCCCAACCCA
  GGTCTAGCAA GTGTGACATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37684965	NES09212168	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27493937					SNP	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37684965	NES09212168	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119119588 () rs orientation: forward

Symbol	Name	Function Class
Cldn19	claudin 19	mRNA-UTR
Rr598553	regulatory region 598553	930 bp distal
Tssr38732	transcription start site region 38732	125 bp downstream