rs27492723 SNP Detail

Summary

• ID
  rs27492723
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109764610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCT AGTGAGACTT CTTTCTGACT
  Y
  GTGCTGTTAC AGCTTGTGCT GCCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37676955	NES09047464	PERLEGEN	MM_PANEL2	f	SNP	C			C	T	C		C	T	T	C	C	C	C	C
ss45337756	mCV23137704	ABI	CRAMUS_MOUSE	f	SNP	C		T				C		T
ss147206579	ENSMUSSNP7154084	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27492723					SNP	C	C	T	C	T	C	C	C	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37676955	NES09047464	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109764610 () rs orientation: forward

Symbol	Name	Function Class
Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4	Intron
Rr562517	regulatory region 562517	1428 bp distal
Rr562518	regulatory region 562518	1612 bp proximal