rs27492716 SNP Detail

Summary

• ID
  rs27492716
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109766711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACGAGTGA GTGTATCTGA
  ATAACGTAAA TGTGTTATGA AACAGGAATT ACAACATGTA GACTGCACGC TAGGTGTACA
  GTGTAAACGT TGGCAGTCCT GGCTTTGGAT TGAGCGCCCA GGCACTTCCT GCAGTGGCAG
  TGTTTCATGA CTGAGCACCG GACAGTCTAA GTGTGGGGCA TAGGCTCGGG TCTTTGCTTG
  K
  GAATTAGTAG CAGCTTACCT TCTGATGACT CAGTATATTT GCCTTAATTG CTAGATTAAC
  CAACTTTTCC TTCCCAAAGA GGAATGAATG AGTGAAGTGT TAAGTGCTAA TTTTTGTGGT
  ATTTAAGCAA CAATAGTCCA GATTACCCAC AACCTTCTTG TCCTTTCAGG ATCCTATGGA
  TGGGCTTTGT CAGTGTTTAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37676948	NES09047427	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G		G	G	G	T	G	T	T	G
ss45246307	mCV23137695	ABI	CRAMUS_MOUSE	f	SNP		T						G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27492716					SNP	T	T	G	G	G	G	G	G	G	G	G	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37676948	NES09047427	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109766711 () rs orientation: forward

Symbol	Name	Function Class
Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4	Intron
Rr562518	regulatory region 562518	within coordinates