rs27492105 SNP Detail

Summary

• ID
  rs27492105
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129939864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTC TAACCCCAAC ATATACCCTA
  Y
  AGCCGCTTCG CTTCCTTTTC TGAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37717627	NES09175452	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T		T	C	C		C	T	T		T
ss45649678	mCV22593384	ABI	CRAMUS_MOUSE	f	SNP	T	T			C
ss147458118	ENSMUSSNP4488454	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss321316716	CHEV_4_129723315	CHEVERUD	SCREENING_POP	f	SNP									T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27492105					SNP	T	T	T	T	C	T	C	C	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717627	NES09175452	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129939864 () rs orientation: forward

Symbol	Name	Function Class
Col16a1	collagen, type XVI, alpha 1	1774 bp upstream
Cpgi14918	CpG island 14918	74 bp distal
Cpgi14919	CpG island 14919	1252 bp proximal
Gm12963	predicted gene 12963	within coordinates
Rr600418	regulatory region 600418	1488 bp distal
Rr600419	regulatory region 600419	within coordinates
Rr600420	regulatory region 600420	410 bp distal
Rr600421	regulatory region 600421	922 bp proximal
Rr600422	regulatory region 600422	1678 bp proximal
Rr600423	regulatory region 600423	1780 bp proximal
Tssr1308	transcription start site region 1308	1475 bp upstream
Tssr39217	transcription start site region 39217	1289 bp upstream
Tssr39218	transcription start site region 39218	1785 bp upstream
Tssr39219	transcription start site region 39219	1843 bp upstream