rs27492104 SNP Detail

Summary

• ID
  rs27492104
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129939881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATACC CTACAGCCGC TTCGCTTCCT
  Y
  TTCTGAGGTT CATCCAAACT CAACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37717626	NES09175454	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C		C	C	T		T	C	C	T		C
ss45648250	mCV22593200	ABI	CRAMUS_MOUSE	f	SNP	C	C				T
ss147458122	ENSMUSSNP2157992	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss321316717	CHEV_4_129723332	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27492104					SNP	C	C	C	C	C	T	C	C	T	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717626	NES09175454	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129939881 () rs orientation: forward

Symbol	Name	Function Class
Col16a1	collagen, type XVI, alpha 1	1757 bp upstream
Cpgi14918	CpG island 14918	91 bp distal
Cpgi14919	CpG island 14919	1235 bp proximal
Gm12963	predicted gene 12963	within coordinates
Rr600418	regulatory region 600418	1505 bp distal
Rr600419	regulatory region 600419	within coordinates
Rr600420	regulatory region 600420	427 bp distal
Rr600421	regulatory region 600421	905 bp proximal
Rr600422	regulatory region 600422	1661 bp proximal
Rr600423	regulatory region 600423	1763 bp proximal
Tssr1308	transcription start site region 1308	1458 bp upstream
Tssr39217	transcription start site region 39217	1272 bp upstream
Tssr39218	transcription start site region 39218	1768 bp upstream
Tssr39219	transcription start site region 39219	1826 bp upstream