rs27492103 SNP Detail

Summary

• ID
  rs27492103
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129941665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTC TTCCCTCTCC AGGAGCGGCC
  S
  GCAGTTCCTG CAAGCAGGCG TGTGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37717625	NES09175409	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C		C	G		C	C		C
ss45596724	mCV22593174	ABI	CRAMUS_MOUSE	f	SNP	C	C	C				G	C
ss147458215	ENSMUSSNP6640004	ENSEMBL	ENSEMBL_Sanger	f	SNP			C					C
ss321316727	CHEV_4_129725116	CHEVERUD	SCREENING_POP	f	SNP										C			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27492103					SNP	C	C	C	C	C	C	G	C	G	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717625	NES09175409	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129941665 () rs orientation: forward

Symbol	Name	Function Class
Col16a1	collagen, type XVI, alpha 1	mRNA-UTR
Gm12963	predicted gene 12963	within coordinates
Rr600419	regulatory region 600419	1757 bp distal
Rr600421	regulatory region 600421	124 bp distal
Rr600422	regulatory region 600422	22 bp distal
Rr600423	regulatory region 600423	within coordinates
Tssr1308	transcription start site region 1308	273 bp downstream
Tssr39217	transcription start site region 39217	483 bp downstream
Tssr39218	transcription start site region 39218	within coordinates
Tssr39219	transcription start site region 39219	42 bp upstream