rs27492102 SNP Detail

Summary

• ID
  rs27492102
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129941921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGC TTCTCCCTCT GAGCTGAAAG
  K
  GCATATTCTG CTACTGACTC GCTAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37717624	NES09175410	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T		T	G		T	T		T
ss45667880	mCV22593164	ABI	CRAMUS_MOUSE	f	SNP	T	T				G	T
ss147458220	ENSMUSSNP2369646	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					T
ss321316728	CHEV_4_129725372	CHEVERUD	SCREENING_POP	f	SNP									T			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27492102					SNP	T	T	T	T	T	G	T	G	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717624	NES09175410	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129941921 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col16a1	collagen, type XVI, alpha 1			Intron
				Noncoding-Transcript-Variant
Cpgi14919	CpG island 14919			26 bp distal
Gm12963	predicted gene 12963			within coordinates
Rr600421	regulatory region 600421			380 bp distal
Rr600422	regulatory region 600422			278 bp distal
Rr600423	regulatory region 600423			within coordinates
Rr600424	regulatory region 600424			1965 bp proximal
Tssr1308	transcription start site region 1308			529 bp downstream
Tssr39217	transcription start site region 39217			739 bp downstream
Tssr39218	transcription start site region 39218			227 bp downstream
Tssr39219	transcription start site region 39219			199 bp downstream