rs27492096 SNP Detail

Summary

• ID
  rs27492096
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129943231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAACACAG CCCTGGGATT
  CGTGAAACAT TTTTGATAAA TTGCCTCTGC TCATGGCCCC TTGCTTTCTC TGCCTCTGTG
  ATCTTTTAGA ACCCTCTAGA CCTCTCCTCA ACCCAGCGGC AAGCTCATGA CATAGCAGAA
  GCTGTCTGGG CCTTGCTTCT GTGCTTCAGC TAGGCTTGTG CTCGGGCTGG TGAGTGTCTA
  R
  GGCATACCGG TGGTTAAATA TTTTCTTTAT TACTACTGCC CAGATTCTCA CCCCAGGCTT
  GTGTGGGGCC TCTAAGAGGA ACTGACACCA AGCCCTTATC CCTGCAGTCC CTGGTACATG
  GGTCCCAAGA AGGCTGTCAC TTACCCACAC TTTTGGGCAC TCTGAAGCCC ACCCCCCATG
  TCTCTGGTTG TCAGGTGCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37717618	NES09175359	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27492096					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717618	NES09175359	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129943231 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col16a1	collagen, type XVI, alpha 1			Intron
				Noncoding-Transcript-Variant
Cpgi14919	CpG island 14919			1336 bp distal
Gm12963	predicted gene 12963			1016 bp upstream
Rr600421	regulatory region 600421			1690 bp distal
Rr600422	regulatory region 600422			1588 bp distal
Rr600423	regulatory region 600423			854 bp distal
Rr600424	regulatory region 600424			655 bp proximal
Tssr1308	transcription start site region 1308			1839 bp downstream
Tssr39218	transcription start site region 39218			1537 bp downstream
Tssr39219	transcription start site region 39219			1509 bp downstream
Tssr39220	transcription start site region 39220			1272 bp upstream
Tssr39221	transcription start site region 39221			1303 bp upstream