rs27492095 SNP Detail

Summary

• ID
  rs27492095
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129943330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAG GAACTGACAC CAAGCCCTTA
  Y
  CCCTGCAGTC CCTGGTACAT GGGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss37717617	NES09175360	PERLEGEN	MM_PANEL2	f	SNP		C	C		C	C	T		T	C	T
ss45586608	mCV22593150	ABI	CRAMUS_MOUSE	f	SNP	C			T
ss147458246	ENSMUSSNP2509294	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321316733	CHEV_4_129726781	CHEVERUD	SCREENING_POP	f	SNP								C				T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs27492095					SNP	C	C	C	T	C	C	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717617	NES09175360	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129943330 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col16a1	collagen, type XVI, alpha 1			Intron
				Noncoding-Transcript-Variant
Cpgi14919	CpG island 14919			1435 bp distal
Gm12963	predicted gene 12963			1115 bp upstream
Rr600421	regulatory region 600421			1789 bp distal
Rr600422	regulatory region 600422			1687 bp distal
Rr600423	regulatory region 600423			953 bp distal
Rr600424	regulatory region 600424			556 bp proximal
Tssr1308	transcription start site region 1308			1938 bp downstream
Tssr39218	transcription start site region 39218			1636 bp downstream
Tssr39219	transcription start site region 39219			1608 bp downstream
Tssr39220	transcription start site region 39220			1173 bp upstream
Tssr39221	transcription start site region 39221			1204 bp upstream