rs27492092 SNP Detail

Summary

• ID
  rs27492092
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129943615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGT ATATCTCAGC CATTTGGCAT
  Y
  TATGGGCAAG TGTAGAGGCA GAGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37717614	NES09175363	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	C	C	T		T	C	C	T		C
ss45680223	mCV22593128	ABI	CRAMUS_MOUSE	f	SNP		C	C					T
ss147458270	ENSMUSSNP2683208	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss321316736	CHEV_4_129727066	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27492092					SNP	C	C	C	C	C	C	C	T	C	C	C	T	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717614	NES09175363	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129943615 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col16a1	collagen, type XVI, alpha 1			Intron
				Noncoding-Transcript-Variant
Cpgi14919	CpG island 14919			1720 bp distal
Gm12963	predicted gene 12963			1400 bp upstream
Rr600422	regulatory region 600422			1972 bp distal
Rr600423	regulatory region 600423			1238 bp distal
Rr600424	regulatory region 600424			271 bp proximal
Tssr39218	transcription start site region 39218			1921 bp downstream
Tssr39219	transcription start site region 39219			1893 bp downstream
Tssr39220	transcription start site region 39220			888 bp upstream
Tssr39221	transcription start site region 39221			919 bp upstream