rs27491936 SNP Detail

Summary

• ID
  rs27491936
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129976692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCG CTCACTTGAG CAAATGTGTC
  Y
  CTGCAGCCGC CTCTCTGGAA GCTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37717455	NES09174474	PERLEGEN	MM_PANEL2	f	SNP	T			T		C		C		C	T	C		T
ss45630203	mCV25118123	ABI	CRAMUS_MOUSE	f	SNP		T	T		C		T
ss147459426	ENSMUSSNP5722021	ENSEMBL	ENSEMBL_Sanger	f	SNP			T				T
ss321316960	CHEV_4_129760143	CHEVERUD	SCREENING_POP	f	SNP									T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27491936					SNP	T	T	T	T	C	C	T	C	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717455	NES09174474	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129976692 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col16a1	collagen, type XVI, alpha 1			Intron
				Noncoding-Transcript-Variant
Gm70130	predicted gene, 70130			841 bp upstream
Rr600432	regulatory region 600432			852 bp distal
Rr600433	regulatory region 600433			364 bp distal
Rr600434	regulatory region 600434			525 bp proximal
Rr600435	regulatory region 600435			1774 bp proximal