rs27487287 SNP Detail

Summary

• ID
  rs27487287
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:120072000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTG GTAGGTGGAG AAGAACATTG
  Y
  AGAGAGTATA ACCAGCCAAG TAAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37713607	NES09197425	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	T	C		T	C	T	C		C	T	C	C
ss45650414	mCV24262124	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T	T
ss147341360	ENSMUSSNP3584829	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27487287					SNP	C	C	T	T	C	T	C	T	T	C	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37713607	NES09197425	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:120072000 () rs orientation: forward

Symbol	Name	Function Class
Rr598761	regulatory region 598761	1204 bp proximal
Rr598762	regulatory region 598762	1311 bp proximal
Rr598763	regulatory region 598763	1590 bp proximal
Rr598764	regulatory region 598764	1937 bp proximal