rs27487286 SNP Detail

Summary

• ID
  rs27487286
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:120072173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGTGGTA GGTGGAGAAG
  AACATTGTAG AGAGTATAAC CAGCCAAGTA AGCCCAGTAG TTGGGACTCT GACTTGGGGA
  CGGGGGGTGG AGAGAATTCA GACAAGGGCT GGAGATCCCA GGGTCCAGGG AATGTAGGCC
  TCCAGCACAA GCAGTAACTC TTATCCTGAA AGTCTGGAGA AAGTGCTACA AGATTTGAGC
  R
  TGGGAAATTG TGTGGGTAGG TGTGTGCACA TGTATGTGCC TGGTGAAGAT CTGTGGCTGC
  CGTTCCAGAG AGGGCTGGAA GAGAAGCGAT GTGTTCATGA CCTGCCTAGA GACTCTCCTC
  TCACAGCCCT CTCCTCAGTC CAGCAGACAG TCGGGGAAGG AGAAGTAAAT GGCTGGGGTG
  TGTAGATTCT GTAGTCTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37713606	NES09197426	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	A	G	G	G	G		A	G	G	A
ss45701778	mCV24262115	ABI	CRAMUS_MOUSE	f	SNP	A	A						G
ss147341375	ENSMUSSNP4583147	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27487286					SNP	A	A	G	G	G	A	A	G	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37713606	NES09197426	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:120072173 () rs orientation: forward

Symbol	Name	Function Class
Rr598761	regulatory region 598761	1031 bp proximal
Rr598762	regulatory region 598762	1138 bp proximal
Rr598763	regulatory region 598763	1417 bp proximal
Rr598764	regulatory region 598764	1764 bp proximal