rs27487281 SNP Detail

Summary

• ID
  rs27487281
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:120073285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGGACCT AGAAGGTCTG
  TGAAGTGGGT GAGAGGCCAA GCTGGGATAA GATGGACCCA GTCCTGTTTT CCCCCTTGAT
  CTGGAGGGAA CAGTGGCAAG GTCAGACTGT GCGGAAGCTG CTAGGGGCCC GCAGGTGCTG
  CGGGTAGCTA GCTGGGCAGG GGCAGGACCT GATGAGCCAG ATGGAGAGGG AGGGTGCTTT
  W
  CCGGTGCAAG AACAATGCAG ATGTCTCAGC CAGCAGGGGG CACTGGTGCT GCAGAAATCC
  TGCCCAGTGG CCATCAGGGA GTTTGATGGC ATGGAGTCTC AAGACCTGGA GCAGGGATGA
  GCCCAGCAGT ATAGGGAATA GATGATCTGG GCAAACCACA AGACACCCGA GGGCTTGGAT
  GCTTGGCTGC TGCTTTCTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37713601	NES09197417	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27487281					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37713601	NES09197417	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:120073285 () rs orientation: forward

Symbol	Name	Function Class
Rr598761	regulatory region 598761	within coordinates
Rr598762	regulatory region 598762	26 bp proximal
Rr598763	regulatory region 598763	305 bp proximal
Rr598764	regulatory region 598764	652 bp proximal