rs27487270 SNP Detail

Summary

• ID
  rs27487270
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:120074278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCCCATT CAGGCCAGGG
  CAGGTACACT GCTCAGGGCA GAGCCAAGCC TTCAGTGTAG GATGAGACTG CCCACTGTGG
  GAAGATGGGG CTGGAGCCTC AGCCACCTGC CAGGTTTGCT TACTGACTCT CAGTCTCAGC
  ATGAATCAGG AAGACTCTTA CTCTATTGTC TAGAAGTCAG CATGGGTGCT TTCTGCAGGC
  Y
  ACACACACAG GTGGGATGAA AGGCCAAGGT CATGGAGTCA GTGGGTGGCA AGGCCAGACT
  GGCTCCCAGT GCCTGGCTCC CCCTACCACT GCTCTCTGCT GGGGGGTAGG GGCCTCTGAA
  GCTATCAAGA TGTTCAGTGC CTAGAGAACC TGGGCAAGTC CTTCCCTCTT AGCCTCAGGC
  TCCTCTGCTT CAAGCACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37713590	NES09197400	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27487270					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37713590	NES09197400	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:120074278 () rs orientation: forward

Symbol	Name	Function Class
Rr598761	regulatory region 598761	592 bp distal
Rr598762	regulatory region 598762	946 bp distal
Rr598763	regulatory region 598763	667 bp distal
Rr598764	regulatory region 598764	320 bp distal
Rr598765	regulatory region 598765	1929 bp proximal