rs27486099 SNP Detail

Summary

• ID
  rs27486099
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119818060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTGTATT TCTGGCTGTT
  CTAGCTCTGC CCCACTTCAG CCCTGCCCAT CACACAGCCC TGTGCTGCCC TCAGGCTTTG
  AGTGGGCTCA GTCATTGAGA TTCTGAGCAA GGCTCCTTCT CCTCTTCATT ATCCAACTTC
  CATTTATTGA TTGGTGGCTT CCACATGTGT AGCCTGACGC TGGCAGCTAA GACGGAAAAC
  R
  GCTGCTAACG TGTCTAAGCA TTTGCCAGGT GTCTGGCAAG GCCATTCAGG TCTGTTCATT
  TATTTAATCA TCACAAATGA TTACAGGGTA TACTTGTGTG GTTTACAGAA GAGGTGGCAG
  GCTGGAGGGT TTGGGTTAGA CAGTGGGGTC TGGACACTTG TGGAGTGGCA GAGTCAGTCT
  TCTTCCTAAG AGTCCCCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37714622	NES09203726	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27486099					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37714622	NES09203726	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119818060 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm68146	predicted gene, 68146			1343 bp upstream
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
Rr398437	regulatory region 398437			1265 bp downstream
Rr598691	regulatory region 598691			1354 bp distal
Rr598692	regulatory region 598692			853 bp distal
Rr598693	regulatory region 598693			1268 bp proximal
Rr598694	regulatory region 598694			1385 bp proximal
Tssr43140	transcription start site region 43140			1670 bp downstream