rs27486097 SNP Detail

Summary

• ID
  rs27486097
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119818302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGGGGTCT GGACACTTGT GGAGTGGCAG AGTCAGTCTT
  CTTCCTAAGA GTCCCCTCTT CACCTGACAG TTGCTGCCTT GGCAGACCAA AGTCAGAGCA
  K
  CTCGACCCTG GCCGTGCCTC AGACCTTGCA AATAGTGCTG TGTTTTGTAC TCATTTGGGT
  CCCGGGCAAA AGCCTCTCTT GTTCAAGGAA CACTTCTAA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37714620	NES09203728	PERLEGEN	MM_PANEL2	f	SNP	G		T	G	T	G	T		G	T	G	G	G	T	G	G
ss45648295	mCV24263802	ABI	CRAMUS_MOUSE	f	SNP		G	T					G		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27486097					SNP	G	G	T	G	T	G	T	G	G	T	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37714620	NES09203728	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119818302 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm68146	predicted gene, 68146			1585 bp upstream
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
Rr398437	regulatory region 398437			1507 bp downstream
Rr598691	regulatory region 598691			1596 bp distal
Rr598692	regulatory region 598692			1095 bp distal
Rr598693	regulatory region 598693			1026 bp proximal
Rr598694	regulatory region 598694			1143 bp proximal
Tssr43140	transcription start site region 43140			1428 bp downstream