rs27486092 SNP Detail

Summary

• ID
  rs27486092
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119819562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACCCTGA AAATTCACAG
  AGCTTAGATG GGTCCAGGGC AAATGATGAA ATCCAGCTGC TGAGAAGCTC AGTGGACCCA
  GTTGGTGGCA GCAGAGGGCA TATAACATTC AGGTCAACGG TTCTGGCTCA GGAGAGCATG
  CAGTGGGGTT CTAGTCTACT AATGGAACAG GCTAGTGGTG TGGGCTGTCT GAGCCTTGAT
  Y
  CCCCACTGCA CAGAGGTGAC TGGGTGGGAT GCACTCTGCA GAGGTAAAAT GGAGAACGCT
  AACTGAAGCT CTGAGAATTG CGCCTGGCAG GAAACAAATG CTCAGTGAAT GTCCACTGCC
  CTGTTGTTGC CGGGATGACA GCAATGGTGA TGCTGATGGT GATAATGGTG AGGAGGGTAA
  GAAGGATCAT AAAGGTTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37714615	NES09203653	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27486092					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37714615	NES09203653	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119819562 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
Rr598693	regulatory region 598693			within coordinates
Rr598694	regulatory region 598694			96 bp distal
Tssr43140	transcription start site region 43140			168 bp downstream