rs27486086 SNP Detail

Summary

• ID
  rs27486086
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119820103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTAACTTT TTCCATGCCC
  TTGGGCCTTT GGTCACCATT CTGCCCCTGG ATTCCTTAGC ATCCTTCCCG GAAGCTGAGG
  ACCCCTTGGC CAAGGTTTTG AGATCTTCGC ATTCATTTAA CCTTTTCAAG GCCCTGCTCT
  CACCTCCTCA GTGTATGGTT GTGCCCAGCC CCTGACTGGT CACTGGTGGT GTCATGATGT
  Y
  AGCTGCATGC CGGTGTAAGC AGTTTCTCTG CTCACTCCTC AGATGAGCAA GCCCCAGAAC
  ACCAGGCTTT AACAGGTTCT TCCTGACTGA TTCACCCACA CAGCAGAGTT GGCAGAAAAA
  TAAAAACAAA ACAGGAAAAG AGCTGAATGT GAAATAGAGG TTCCTATCAG ACATGTTAGC
  CCCAGAGTAT AGCTTCCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37714609	NES09203659	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27486086					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37714609	NES09203659	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119820103 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
Rr598693	regulatory region 598693			within coordinates
Rr598694	regulatory region 598694			637 bp distal
Tssr43140	transcription start site region 43140			363 bp upstream