rs27486061 SNP Detail

Summary

• ID
  rs27486061
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119825393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGCTTGC TGTGCAAGCA
  TTTTGCCCAC TGAGCTACTT CCCCAGCCCC ATATATGATG GTTTGTTTTA AATGTTATTT
  TTTTTTCTCT CTCTCTTACA TCTTCAAGTA GAGTCAATGT TCTGAGCAGA TGTCCTTGAA
  CTTCCTGGAG TGGTGCCCAG GACCCCCACG AGGACTAGAA ACCCGAGAGT CAATGATTCC
  Y
  GAGGACAGAT CCAGCAAAAC TCCCATCATG TCTGTGCAGT CTGAAGTCTT GGCCAGAGTC
  CAGGAAGCCC AGGCAGCAGC AGCCTGGCTC TGTCTCCAAA ACCACGGAAA GCCTTCCCTG
  CTCCCACAGT CCCCTGCAGA GGAGGAACCT AGTCTCCTCA CTGCACCCTG CCCAGGGGCA
  AAGGCTGGGC AAGCCAGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37714584	NES09203490	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27486061					SNP	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37714584	NES09203490	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119825393 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
Rr598695	regulatory region 598695			933 bp distal
Rr598696	regulatory region 598696			within coordinates
Rr598697	regulatory region 598697			822 bp proximal
Rr598698	regulatory region 598698			1605 bp proximal
Tssr43141	transcription start site region 43141			1353 bp upstream
Tssr43142	transcription start site region 43142			1304 bp upstream