rs27486060 SNP Detail

Summary

• ID
  rs27486060
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119825452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGACCCCCAC GAGGACTAGA AACCCGAGAG TCAATGATTC
  CTGAGGACAG ATCCAGCAAA ACTCCCATCA TGTCTGTGCA GTCTGAAGTC TTGGCCAGAG
  Y
  CCAGGAAGCC CAGGCAGCAG CAGCCTGGCT CTGTCTCCAA AACCACGGAA AGCCTTCCCT
  GCTCCCACAG TCCCCTGCAG AGGAGGAACC TAGTCTCCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss37714583	NES09203491	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	C	T	T	T	T
ss147339670	ENSMUSSNP2337255	ENSEMBL	ENSEMBL_Sanger	f	SNP		C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs27486060					SNP	T	C	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37714583	NES09203491	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119825452 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
Rr598695	regulatory region 598695			992 bp distal
Rr598696	regulatory region 598696			within coordinates
Rr598697	regulatory region 598697			763 bp proximal
Rr598698	regulatory region 598698			1546 bp proximal
Tssr43141	transcription start site region 43141			1412 bp upstream
Tssr43142	transcription start site region 43142			1363 bp upstream