rs27485121 SNP Detail

Summary

• ID
  rs27485121
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109984043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTCTGGTG TTGACACTTT
  ACAGTATACA ACCATGAAAA ATGTTTCTTC AGATGACACA GTGACCAGGG TTGTGATGCA
  ATGATAAATA AAAAAAAAAA AAAGAAGATC AAACTGTATG AGTAATACAA TCACAAAAAG
  TTCTAAACTG CAGGAAATGC ACAAATCCAC AGTCACCATG TTACAATAAT GAAATTGTAG
  R
  TACTTTTCTT TACTTTTCTG ATGGGCAGCA ATGTATTACT TCAATGCTAT TTCTGTGGTA
  CTTGGTTTCC TAATTAGGTT GTACAGATAA CCCTCTTTTT TTTTTTTTTA AATCAGGGTG
  GCTATTTTGA GGGATACACA TGATGGTCCT ATCACAGAGC CTGTGCATAG GAGGTGACCA
  AGGTATGTCA ATCATTCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37709540	NES09227656	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27485121					SNP	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37709540	NES09227656	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109984043 () rs orientation: forward

Symbol	Name	Function Class
Rr597401	regulatory region 597401	867 bp distal
Rr597402	regulatory region 597402	1108 bp proximal