rs27485117 SNP Detail

Summary

• ID
  rs27485117
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109984491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCACAGTA AGAGTGAGGT
  AGCTAGGTGC AAATCAGTAA TCTTGAGGCG AGGGATCTCA GAGTCAAGGG TAGACACACT
  GTCTTTCCAT CATGATACCA TCTGAAAGAA GGAAGGAAGG TCAGACCCTC CTGTGAGGGT
  CACCTGGGTG TCAAACCTCA AGACAGCCTC TGAAATATGC TTTTCCACCT TGGTGTCTTT
  R
  GGAAACACAC TCCACCATGG TGGCTTTCTG GACAGTTTCT TCCCAGGACT TTGGTGAGTG
  GCAGGTTTCT GTATTGATGC TGCCAGATGG GTCCACAGAT CAACCATGCT TTTATCTGTT
  TGATCATCCA TTGCTCATTT GCTTATTCAC TGAGCCCTAA TGAGATGTGC CTGCAGTAGA
  CCCTTACAGG TGTAGACTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37709536	NES09227660	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27485117					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37709536	NES09227660	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109984491 () rs orientation: forward

Symbol	Name	Function Class
Rr597401	regulatory region 597401	1315 bp distal
Rr597402	regulatory region 597402	660 bp proximal
Rr597403	regulatory region 597403	1675 bp proximal
Rr597404	regulatory region 597404	1786 bp proximal