rs27485116 SNP Detail

Summary

• ID
  rs27485116
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109984668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTTTCCA CCTTGGTGTC
  TTTGGGAAAC ACACTCCACC ATGGTGGCTT TCTGGACAGT TTCTTCCCAG GACTTTGGTG
  AGTGGCAGGT TTCTGTATTG ATGCTGCCAG ATGGGTCCAC AGATCAACCA TGCTTTTATC
  TGTTTGATCA TCCATTGCTC ATTTGCTTAT TCACTGAGCC CTAATGAGAT GTGCCTGCAG
  Y
  AGACCCTTAC AGGTGTAGAC TCTGTTACTA GGTGGGGTGG GATCTGTACA ATGGGCTCTC
  TTGTTCTTTA ACTCACCTCA AATCTTCTCT GCACAAGGCA CTCATTGAAA AACACAACCA
  CTGACTGTCA AGTAACAAAA CACAGAGGAG TGACCCCTCC AATATTCAGT TGTTGCCCTG
  GCTCTGCTGG TCCTGTCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37709535	NES09227661	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		C	T	T	C		T
ss321255076	CHEV_4_109800076	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27485116					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37709535	NES09227661	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109984668 () rs orientation: forward

Symbol	Name	Function Class
Rr597401	regulatory region 597401	1492 bp distal
Rr597402	regulatory region 597402	483 bp proximal
Rr597403	regulatory region 597403	1498 bp proximal
Rr597404	regulatory region 597404	1609 bp proximal