rs27485111 SNP Detail

Summary

• ID
  rs27485111
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109985079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGTTCTT CTGCTTCAGC
  TCTTGGAGTC ATGCTCTTGG CTGGAGTTAT CTTTGTAAAA CATAGCTGAC CTCAAGACAG
  CATCCCTGCC TCCCAGCCTG GCAGTGTAGA TCTCTTGTAA TTGGATTGTT CAGTGTGCAC
  CCAAACACAC AGCCAGTTCT TGCTCCTTGG GCTGTGTGTT CTTCCTGCTT TTCTTTTTTC
  W
  TACACAGCCA ACTCTTAAAA CCCAGTTCAC ATTCTGCTCA GCTTCAGCTT CCCAGACTCT
  GCAGTCACTG GCTTCAGCCC TGCAGTATTT CCCCAGTCTG GCCCTCTTCC TCTGAGGTCC
  AAGCATAACC TCAAGGCACA GACAGCATCT TTCCATTTCT GTGCCCTCTA ACCTTAGCTC
  AGAGGCTGGC TCAGGCAATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37709530	NES09227666	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27485111					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37709530	NES09227666	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109985079 () rs orientation: forward

Symbol	Name	Function Class
Rr597401	regulatory region 597401	1903 bp distal
Rr597402	regulatory region 597402	72 bp proximal
Rr597403	regulatory region 597403	1087 bp proximal
Rr597404	regulatory region 597404	1198 bp proximal