rs27485105 SNP Detail

Summary

• ID
  rs27485105
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109986433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTAACCTT TAGTTATTCT
  GAGAAAGCTT TGCAATATAG CCCAGCAGTG CCCACTAGAG GGAGCAGCAG AGCAGTCTAG
  AGCCTCTGTG TTAAAGGCTG TGGAAAGGAG GTACCAACGC TGGAGTAGAT TCTGGGCTTG
  CCCAGAAAGA GGAATACAGG GTACAGGATG TATTGTAATG AGGTCTTAGG CTCACCTCAC
  Y
  GCAATGATTC TTTCCAGAGT CAAATGGCAC TTGGGGCTCT CTTTGAGAAG CAAACAATAA
  GGAAAAAACC AGCTCAATGG CCCAAGGGCA GAGACTATCT TTCTTTATCT TTAGGGAGTG
  AGAGGTATGA AGAGAGTGAA AGTGTAGGTT TTAGGTCTCT TTCCTTTGTG CACTGCTTCT
  ATTTAGCTCC AGAGCCTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37709524	NES09227636	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T		C	T	T	C		T
ss321255085	CHEV_4_109801841	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27485105					SNP	T	T	T	T	T	C	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37709524	NES09227636	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109986433 () rs orientation: forward

Symbol	Name	Function Class
Rr597402	regulatory region 597402	846 bp distal
Rr597403	regulatory region 597403	within coordinates
Rr597404	regulatory region 597404	132 bp distal