rs27485102 SNP Detail

Summary

• ID
  rs27485102
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109987582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGGGTATA TTTCAGTCTA
  CCATCACTTG GATAAACAGT AGTTTTATTT TTAAGAGTAA AACTGGGGCC TTGCACATGC
  TAGGCAAGGG CTCAGATACT GATTCTGTGC CTCTCTGGGC ATGGATAGGT CCTGTTCATC
  TGCACTCAGT ACTGGAAACC CTCCACCAGA ATGTTTACTG AAATGTTTTT TTCTCCCCAG
  Y
  CCTTTGTTTT ATGAAATCTC TCTCTCTTTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTTTT GGTTTTTCGA GACAGGGTTT CTCTGTATAG CCCTGGCTGT
  CCTGGAGCTC ACTTTGTAGA CCAGGCTGGC CTCGAACTCA GAAATCCGCC TGCCTCTGCC
  TCCCGAGTGC TGGGATTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37709521	NES09227568	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		T	C	C		C
ss321255088	CHEV_4_109802990	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27485102					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37709521	NES09227568	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109987582 () rs orientation: forward

Symbol	Name	Function Class
Rr597402	regulatory region 597402	1995 bp distal
Rr597403	regulatory region 597403	311 bp distal
Rr597404	regulatory region 597404	1281 bp distal
Rr597405	regulatory region 597405	1768 bp proximal